Brown_Kiwi_NW_013982187v1

AminoSee DNA Render Summary for /home/tom/Sites/AminoSee/dna/Brown_Kiwi_NW_013982187v1.fa Science render mode

M7C518H400.1

Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

419,524,425 Composite of all amino acids Brown_Kiwi_NW_013982187v1 Reference
1. Ochre

255,128,128

8,536,988 STOP Codon Brown_Kiwi_NW_013982187v1 Ochre
2. Glutamic acid

16°

255,162,128

15,156,384 Group III: Acidic amino acids Brown_Kiwi_NW_013982187v1 Glutamic acid
3. Aspartic acid

31°

255,193,128

9,490,258 Group III: Acidic amino acids Brown_Kiwi_NW_013982187v1 Aspartic acid
4. Amber

47°

255,227,128

5,215,637 STOP Codon Brown_Kiwi_NW_013982187v1 Amber
5. Cysteine

63°

249,255,128

16,443,155 Group II: Polar, uncharged amino acids Brown_Kiwi_NW_013982187v1 Cysteine
6. Glycine

78°

217,255,128

19,932,793 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Glycine
7. Alanine

94°

183,255,128

20,581,787 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Alanine
8. Methionine

110°

149,255,128

7,538,596 START Codon Brown_Kiwi_NW_013982187v1 Methionine
9. Valine

125°

128,255,138

21,423,289 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Valine
10. Leucine

141°

128,255,172

46,933,692 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Leucine
11. Isoleucine

157°

128,255,206

22,761,560 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Isoleucine
12. Phenylalanine

172°

128,255,238

24,480,694 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Phenylalanine
13. Tryptophan

188°

128,238,255

6,653,154 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Tryptophan
14. Serine

203°

128,206,255

38,866,347 Group II: Polar, uncharged amino acids Brown_Kiwi_NW_013982187v1 Serine
15. Threonine

219°

128,172,255

21,418,611 Group II: Polar, uncharged amino acids Brown_Kiwi_NW_013982187v1 Threonine
16. Opal

240°

128,128,255

8,073,922 STOP Codon Brown_Kiwi_NW_013982187v1 Opal
17. Glutamine

250°

149,128,255

17,678,881 Group II: Polar, uncharged amino acids Brown_Kiwi_NW_013982187v1 Glutamine
18. Asparagine

266°

183,128,255

16,143,922 Group II: Polar, uncharged amino acids Brown_Kiwi_NW_013982187v1 Asparagine
19. Tyrosine

282°

217,128,255

12,588,615 Group II: Polar, uncharged amino acids Brown_Kiwi_NW_013982187v1 Tyrosine
20. Arginine

297°

249,128,255

21,251,126 Group IV: Basic amino acids Brown_Kiwi_NW_013982187v1 Arginine
21. Lysine

313°

255,128,227

24,911,380 Group IV: Basic amino acids Brown_Kiwi_NW_013982187v1 Lysine
22. Histidine

329°

255,128,193

13,513,605 Group IV: Basic amino acids Brown_Kiwi_NW_013982187v1 Histidine
23. Proline

344°

255,128,162

19,930,029 Group I: Nonpolar amino acids Brown_Kiwi_NW_013982187v1 Proline
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

1D Linear Map Image

2D Hilbert Map Image

Render Summary

          
Canonical Name: Brown_Kiwi_NW_013982187v1
Canonical PNG: Brown_Kiwi_NW_013982187v1.fa_linear_c518_fix_sci.png
Source: Brown_Kiwi_NW_013982187v1.fa
Full path: /home/tom/Sites/AminoSee/dna/Brown_Kiwi_NW_013982187v1.fa
Started: 1:22:23 am Finished: 3:33:24 am Used: 2 hours, 10 minutes, 52.653 seconds  
Machine load averages: 9.9 / 9.98 / 10.04
Bandwidth: 190.43KB / sec DNA Filesize: 1.45GB
Image Output bytes: 3.09MB
Pixels (linear): 809,892 Image aspect Ratio: fix
Pixels (hilbert): 1,048,576 (auto) Dimension 7 Hilbert curve
Linear to Hilbert reduction: 0.77 Oversampling: 4
Custom flags: --C_autoK------M7 C518-I1000000 "Science mode" render style
Estimated Codons: 518,291,295 (filesize % 3)
Actual Codons matched: 419,524,425  
Estimate accuracy: 124% of actual 
Non-coding characters: 217,626,006
Coding characters: 1,532,925,470
Codons per pixel: 518 (linear) 400.09 (hilbert projection)
Max pix setting: 1,000,000
Darken Factor 0.25 / Highlight Factor 4 Black Point: 128
287.7 Gigabytes processed on cheese:
Render serial: 1,251 Render UID: 1568812943739
AminoSee version: 1.28.1
          

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About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.