Mycoplasma_pneumoniae_m129.ASM2734v1.dna_sm.chromosome.Chromosome.fa

AminoSee DNA Render Summary

Hilbert curvers of dimension 5 used, yielding images with ~4.2 codons per pixel including non-coding regions. Linear reference file shows exactly 1 codons per pixel


1D Linear Map Image

2D Hilbert Map Image

MADE IN NEW ZEALAND
╔═╗┌┬┐┬┌┐┌┌─┐╔═╗┌─┐┌─┐  ╔╦╗╔╗╔╔═╗  ╦  ╦┬┌─┐┬ ┬┌─┐┬─┐
╠═╣││││││││ │╚═╗├┤ ├┤    ║║║║║╠═╣  ╚╗╔╝│├┤ │││├┤ ├┬┘
╩ ╩┴ ┴┴┘└┘└─┘╚═╝└─┘└─┘  ═╩╝╝╚╝╩ ╩   ╚╝ ┴└─┘└┴┘└─┘┴└─
by Tom Atkinson            aminosee.funk.nz
ah-mee no-see       "I See It Now != I AminoSee it!"


Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

272,131 Composite of all amino acids Mycoplasmapneumoosome.Chromosome Reference
1. Histidine

329°

255,128,193

6,931 Group IV: Basic amino acids Mycoplasmapneumoosome.Chromosome Histidine
2. Glutamic acid

16°

255,162,128

7,346 Group III: Acidic amino acids Mycoplasmapneumoosome.Chromosome Glutamic acid
3. Aspartic acid

31°

255,193,128

6,260 Group III: Acidic amino acids Mycoplasmapneumoosome.Chromosome Aspartic acid
4. Lysine

313°

255,128,227

19,069 Group IV: Basic amino acids Mycoplasmapneumoosome.Chromosome Lysine
5. Cysteine

63°

249,255,128

7,959 Group II: Polar, uncharged amino acids Mycoplasmapneumoosome.Chromosome Cysteine
6. Glycine

78°

217,255,128

12,185 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Glycine
7. Alanine

94°

183,255,128

12,734 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Alanine
8. Valine

125°

128,255,138

16,033 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Valine
9. Leucine

141°

128,255,172

31,263 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Leucine
10. Isoleucine

157°

128,255,206

13,661 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Isoleucine
11. Phenylalanine

172°

128,255,238

15,651 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Phenylalanine
12. Tryptophan

188°

128,238,255

4,537 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Tryptophan
13. Serine

203°

128,206,255

22,180 Group II: Polar, uncharged amino acids Mycoplasmapneumoosome.Chromosome Serine
14. Threonine

219°

128,172,255

16,797 Group II: Polar, uncharged amino acids Mycoplasmapneumoosome.Chromosome Threonine
15. Glutamine

250°

149,128,255

10,535 Group II: Polar, uncharged amino acids Mycoplasmapneumoosome.Chromosome Glutamine
16. Asparagine

266°

183,128,255

14,033 Group II: Polar, uncharged amino acids Mycoplasmapneumoosome.Chromosome Asparagine
17. Tyrosine

282°

217,128,255

6,999 Group II: Polar, uncharged amino acids Mycoplasmapneumoosome.Chromosome Tyrosine
18. Arginine

297°

249,128,255

15,373 Group IV: Basic amino acids Mycoplasmapneumoosome.Chromosome Arginine
19. Proline

344°

255,128,162

12,337 Group I: Nonpolar amino acids Mycoplasmapneumoosome.Chromosome Proline
20. Methionine

110°

149,255,128

3,669 START Codon Mycoplasmapneumoosome.Chromosome Methionine
21. Ochre

255,128,128

8,097 STOP Codon Mycoplasmapneumoosome.Chromosome Ochre
22. Amber

47°

255,227,128

3,554 STOP Codon Mycoplasmapneumoosome.Chromosome Amber
23. Opal

240°

128,128,255

4,928 STOP Codon Mycoplasmapneumoosome.Chromosome Opal
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

Render Summary

				[object Object]
				

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon



Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.