Gorilla_gorGor4_chr2B.fa

AminoSee DNA Render Summary

Hilbert curvers of dimension 5 used, yielding images with ~647.7 codons per pixel including non-coding regions. Linear reference file shows exactly 5 codons per pixel


1D Linear Map Image

2D Hilbert Map Image

MADE IN NEW ZEALAND
╔═╗┌┬┐┬┌┐┌┌─┐╔═╗┌─┐┌─┐  ╔╦╗╔╗╔╔═╗  ╦  ╦┬┌─┐┬ ┬┌─┐┬─┐
╠═╣││││││││ │╚═╗├┤ ├┤    ║║║║║╠═╣  ╚╗╔╝│├┤ │││├┤ ├┬┘
╩ ╩┴ ┴┴┘└┘└─┘╚═╝└─┘└─┘  ═╩╝╝╚╝╩ ╩   ╚╝ ┴└─┘└┴┘└─┘┴└─
by Tom Atkinson            aminosee.funk.nz
ah-mee no-see       "I See It Now != I AminoSee it!"


Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

42,444,516 Composite of all amino acids Gorilla_gorGor4_chr2B Reference
1. Histidine

329°

255,128,193

1,408,611 Group IV: Basic amino acids Gorilla_gorGor4_chr2B Histidine
2. Glutamic acid

16°

255,162,128

1,534,640 Group III: Acidic amino acids Gorilla_gorGor4_chr2B Glutamic acid
3. Aspartic acid

31°

255,193,128

961,878 Group III: Acidic amino acids Gorilla_gorGor4_chr2B Aspartic acid
4. Lysine

313°

255,128,227

2,562,769 Group IV: Basic amino acids Gorilla_gorGor4_chr2B Lysine
5. Cysteine

63°

249,255,128

1,472,046 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2B Cysteine
6. Glycine

78°

217,255,128

2,062,033 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Glycine
7. Alanine

94°

183,255,128

1,705,001 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Alanine
8. Valine

125°

128,255,138

2,145,680 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Valine
9. Leucine

141°

128,255,172

4,698,409 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Leucine
10. Isoleucine

157°

128,255,206

2,629,702 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Isoleucine
11. Phenylalanine

172°

128,255,238

2,577,749 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Phenylalanine
12. Tryptophan

188°

128,238,255

748,024 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Tryptophan
13. Serine

203°

128,206,255

3,761,386 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2B Serine
14. Threonine

219°

128,172,255

2,127,206 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2B Threonine
15. Glutamine

250°

149,128,255

1,634,938 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2B Glutamine
16. Asparagine

266°

183,128,255

1,754,494 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2B Asparagine
17. Tyrosine

282°

217,128,255

1,431,149 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2B Tyrosine
18. Arginine

297°

249,128,255

2,021,789 Group IV: Basic amino acids Gorilla_gorGor4_chr2B Arginine
19. Proline

344°

255,128,162

2,054,928 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2B Proline
20. Methionine

110°

149,255,128

799,426 START Codon Gorilla_gorGor4_chr2B Methionine
21. Ochre

255,128,128

945,827 STOP Codon Gorilla_gorGor4_chr2B Ochre
22. Amber

47°

255,227,128

566,714 STOP Codon Gorilla_gorGor4_chr2B Amber
23. Opal

240°

128,128,255

840,117 STOP Codon Gorilla_gorGor4_chr2B Opal
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

Render Summary

				[object Object]
				

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon



Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.