Gorilla_gorGor4_chr2A.fa

AminoSee DNA Render Summary

Hilbert curvers of dimension 5 used, yielding images with ~523.6 codons per pixel including non-coding regions. Linear reference file shows exactly 4 codons per pixel


1D Linear Map Image

2D Hilbert Map Image

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by Tom Atkinson            aminosee.funk.nz
ah-mee no-see       "I See It Now != I AminoSee it!"


Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

34,313,968 Composite of all amino acids Gorilla_gorGor4_chr2A Reference
1. Histidine

329°

255,128,193

1,147,212 Group IV: Basic amino acids Gorilla_gorGor4_chr2A Histidine
2. Glutamic acid

16°

255,162,128

1,268,506 Group III: Acidic amino acids Gorilla_gorGor4_chr2A Glutamic acid
3. Aspartic acid

31°

255,193,128

781,982 Group III: Acidic amino acids Gorilla_gorGor4_chr2A Aspartic acid
4. Lysine

313°

255,128,227

2,010,980 Group IV: Basic amino acids Gorilla_gorGor4_chr2A Lysine
5. Cysteine

63°

249,255,128

1,194,135 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2A Cysteine
6. Glycine

78°

217,255,128

1,779,960 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Glycine
7. Alanine

94°

183,255,128

1,457,198 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Alanine
8. Valine

125°

128,255,138

1,731,907 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Valine
9. Leucine

141°

128,255,172

3,765,793 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Leucine
10. Isoleucine

157°

128,255,206

1,999,041 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Isoleucine
11. Phenylalanine

172°

128,255,238

1,990,701 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Phenylalanine
12. Tryptophan

188°

128,238,255

634,648 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Tryptophan
13. Serine

203°

128,206,255

3,077,813 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2A Serine
14. Threonine

219°

128,172,255

1,732,854 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2A Threonine
15. Glutamine

250°

149,128,255

1,350,696 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2A Glutamine
16. Asparagine

266°

183,128,255

1,361,436 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2A Asparagine
17. Tyrosine

282°

217,128,255

1,085,469 Group II: Polar, uncharged amino acids Gorilla_gorGor4_chr2A Tyrosine
18. Arginine

297°

249,128,255

1,702,842 Group IV: Basic amino acids Gorilla_gorGor4_chr2A Arginine
19. Proline

344°

255,128,162

1,773,747 Group I: Nonpolar amino acids Gorilla_gorGor4_chr2A Proline
20. Methionine

110°

149,255,128

639,778 START Codon Gorilla_gorGor4_chr2A Methionine
21. Ochre

255,128,128

709,183 STOP Codon Gorilla_gorGor4_chr2A Ochre
22. Amber

47°

255,227,128

442,672 STOP Codon Gorilla_gorGor4_chr2A Amber
23. Opal

240°

128,128,255

675,415 STOP Codon Gorilla_gorGor4_chr2A Opal
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

Render Summary

				[object Object]
				

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon



Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.