Eucalyptus grandis cultivar BRASUZ1.gbk

AminoSee DNA Render Summary

Hilbert curvers of dimension 5 used, yielding images with ~2,946.3 codons per pixel including non-coding regions. Linear reference file shows exactly 38 codons per pixel


1D Linear Map Image

2D Hilbert Map Image

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by Tom Atkinson            aminosee.funk.nz
ah-mee no-see       "I See It Now != I AminoSee it!"


Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

193,091,839 Composite of all amino acids Eucalyptusgrandicultivar_BRASUZ1 Reference
1. Histidine

329°

255,128,193

6,075,534 Group IV: Basic amino acids Eucalyptusgrandicultivar_BRASUZ1 Histidine
2. Glutamic acid

16°

255,162,128

7,090,718 Group III: Acidic amino acids Eucalyptusgrandicultivar_BRASUZ1 Glutamic acid
3. Aspartic acid

31°

255,193,128

5,409,459 Group III: Acidic amino acids Eucalyptusgrandicultivar_BRASUZ1 Aspartic acid
4. Lysine

313°

255,128,227

11,858,783 Group IV: Basic amino acids Eucalyptusgrandicultivar_BRASUZ1 Lysine
5. Cysteine

63°

249,255,128

5,686,462 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Cysteine
6. Glycine

78°

217,255,128

8,350,858 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Glycine
7. Alanine

94°

183,255,128

7,577,203 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Alanine
8. Valine

125°

128,255,138

9,335,552 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Valine
9. Leucine

141°

128,255,172

20,285,867 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Leucine
10. Isoleucine

157°

128,255,206

13,441,047 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Isoleucine
11. Phenylalanine

172°

128,255,238

11,964,241 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Phenylalanine
12. Tryptophan

188°

128,238,255

2,891,501 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Tryptophan
13. Serine

203°

128,206,255

17,655,784 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Serine
14. Threonine

219°

128,172,255

9,385,674 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Threonine
15. Glutamine

250°

149,128,255

6,488,274 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Glutamine
16. Asparagine

266°

183,128,255

8,763,116 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Asparagine
17. Tyrosine

282°

217,128,255

6,239,910 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Tyrosine
18. Arginine

297°

249,128,255

11,826,073 Group IV: Basic amino acids Eucalyptusgrandicultivar_BRASUZ1 Arginine
19. Proline

344°

255,128,162

8,354,654 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Proline
20. Methionine

110°

149,255,128

3,788,211 START Codon Eucalyptusgrandicultivar_BRASUZ1 Methionine
21. Ochre

255,128,128

4,156,253 STOP Codon Eucalyptusgrandicultivar_BRASUZ1 Ochre
22. Amber

47°

255,227,128

2,478,423 STOP Codon Eucalyptusgrandicultivar_BRASUZ1 Amber
23. Opal

240°

128,128,255

3,988,242 STOP Codon Eucalyptusgrandicultivar_BRASUZ1 Opal
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

Render Summary

				[object Object]
				

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon



Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.