Eucalyptusgrandicultivar_BRASUZ1

AminoSee DNA Render Summary for /home/tom/Sites/AminoSee/dna/Eucalyptus grandis cultivar BRASUZ1.gbk Science render mode

M7C67H184.1

Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

193,091,839 Composite of all amino acids Eucalyptusgrandicultivar_BRASUZ1 Reference
1. Ochre

255,128,128

4,156,253 STOP Codon Eucalyptusgrandicultivar_BRASUZ1 Ochre
2. Glutamic acid

16°

255,162,128

7,090,718 Group III: Acidic amino acids Eucalyptusgrandicultivar_BRASUZ1 Glutamic acid
3. Aspartic acid

31°

255,193,128

5,409,459 Group III: Acidic amino acids Eucalyptusgrandicultivar_BRASUZ1 Aspartic acid
4. Amber

47°

255,227,128

2,478,423 STOP Codon Eucalyptusgrandicultivar_BRASUZ1 Amber
5. Cysteine

63°

249,255,128

5,686,462 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Cysteine
6. Glycine

78°

217,255,128

8,350,858 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Glycine
7. Alanine

94°

183,255,128

7,577,203 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Alanine
8. Methionine

110°

149,255,128

3,788,211 START Codon Eucalyptusgrandicultivar_BRASUZ1 Methionine
9. Valine

125°

128,255,138

9,335,552 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Valine
10. Leucine

141°

128,255,172

20,285,867 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Leucine
11. Isoleucine

157°

128,255,206

13,441,047 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Isoleucine
12. Phenylalanine

172°

128,255,238

11,964,241 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Phenylalanine
13. Tryptophan

188°

128,238,255

2,891,501 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Tryptophan
14. Serine

203°

128,206,255

17,655,784 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Serine
15. Threonine

219°

128,172,255

9,385,674 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Threonine
16. Opal

240°

128,128,255

3,988,242 STOP Codon Eucalyptusgrandicultivar_BRASUZ1 Opal
17. Glutamine

250°

149,128,255

6,488,274 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Glutamine
18. Asparagine

266°

183,128,255

8,763,116 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Asparagine
19. Tyrosine

282°

217,128,255

6,239,910 Group II: Polar, uncharged amino acids Eucalyptusgrandicultivar_BRASUZ1 Tyrosine
20. Arginine

297°

249,128,255

11,826,073 Group IV: Basic amino acids Eucalyptusgrandicultivar_BRASUZ1 Arginine
21. Lysine

313°

255,128,227

11,858,783 Group IV: Basic amino acids Eucalyptusgrandicultivar_BRASUZ1 Lysine
22. Histidine

329°

255,128,193

6,075,534 Group IV: Basic amino acids Eucalyptusgrandicultivar_BRASUZ1 Histidine
23. Proline

344°

255,128,162

8,354,654 Group I: Nonpolar amino acids Eucalyptusgrandicultivar_BRASUZ1 Proline
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

1D Linear Map Image

2D Hilbert Map Image

Render Summary

          
Canonical Name: Eucalyptusgrandicultivar_BRASUZ1
Canonical PNG: Eucalyptusgrandicultivar_BRASUZ1.gbk_linear_c67_fix_sci.png
Source: Eucalyptus grandis cultivar BRASUZ1.gbk
Full path: /home/tom/Sites/AminoSee/dna/Eucalyptus grandis cultivar BRASUZ1.gbk
Started: 2:33:05 am Finished: 4:06:39 am Used: 1 hour, 33 minutes, 13.813 seconds  
Machine load averages: 7.91 / 8.11 / 8.36
Bandwidth: 172.85KB / sec DNA Filesize: 953.68MB
Image Output bytes: 10.99MB
Pixels (linear): 2,881,967 Image aspect Ratio: fix
Pixels (hilbert): 1,048,576 (auto) Dimension 7 Hilbert curve
Linear to Hilbert reduction: 2.75 Oversampling: 4
Custom flags: --C_autoK------M7 C67-I5000000 "Science mode" render style
Estimated Codons: 333,336,233 (filesize % 3)
Actual Codons matched: 193,091,839  
Estimate accuracy: 173% of actual 
Non-coding characters: 336,307,418
Coding characters: 991,932,169
Codons per pixel: 67 (linear) 184.15 (hilbert projection)
Max pix setting: 5,000,000
Darken Factor 0.25 / Highlight Factor 4 Black Point: 128
287.2 Gigabytes processed on cheese:
Render serial: 1,267 Render UID: 1568817185435
AminoSee version: 1.28.1
          

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About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.