Cannabissativa_srain_Purple_Kush

AminoSee DNA Render Summary for /home/tom/Sites/AminoSee/dna/Cannabis_sativa_strain_Purple_Kush.fa Science render mode

M7C30H133

Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

139,413,624 Composite of all amino acids Cannabissativa_srain_Purple_Kush Reference
1. Ochre

255,128,128

4,069,212 STOP Codon Cannabissativa_srain_Purple_Kush Ochre
2. Glutamic acid

16°

255,162,128

4,579,418 Group III: Acidic amino acids Cannabissativa_srain_Purple_Kush Glutamic acid
3. Aspartic acid

31°

255,193,128

3,481,840 Group III: Acidic amino acids Cannabissativa_srain_Purple_Kush Aspartic acid
4. Amber

47°

255,227,128

2,051,334 STOP Codon Cannabissativa_srain_Purple_Kush Amber
5. Cysteine

63°

249,255,128

4,202,671 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Cysteine
6. Glycine

78°

217,255,128

5,259,747 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Glycine
7. Alanine

94°

183,255,128

4,025,834 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Alanine
8. Methionine

110°

149,255,128

2,571,334 START Codon Cannabissativa_srain_Purple_Kush Methionine
9. Valine

125°

128,255,138

7,037,012 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Valine
10. Leucine

141°

128,255,172

15,275,694 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Leucine
11. Isoleucine

157°

128,255,206

11,075,736 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Isoleucine
12. Phenylalanine

172°

128,255,238

9,212,015 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Phenylalanine
13. Tryptophan

188°

128,238,255

1,965,774 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Tryptophan
14. Serine

203°

128,206,255

11,660,451 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Serine
15. Threonine

219°

128,172,255

7,053,980 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Threonine
16. Opal

240°

128,128,255

2,738,710 STOP Codon Cannabissativa_srain_Purple_Kush Opal
17. Glutamine

250°

149,128,255

4,578,339 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Glutamine
18. Asparagine

266°

183,128,255

7,278,543 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Asparagine
19. Tyrosine

282°

217,128,255

5,819,848 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Tyrosine
20. Arginine

297°

249,128,255

6,843,797 Group IV: Basic amino acids Cannabissativa_srain_Purple_Kush Arginine
21. Lysine

313°

255,128,227

9,254,814 Group IV: Basic amino acids Cannabissativa_srain_Purple_Kush Lysine
22. Histidine

329°

255,128,193

4,108,390 Group IV: Basic amino acids Cannabissativa_srain_Purple_Kush Histidine
23. Proline

344°

255,128,162

5,269,131 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Proline
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

1D Linear Map Image

2D Hilbert Map Image

Render Summary

          
Canonical Name: Cannabissativa_srain_Purple_Kush
Canonical PNG: Cannabissativa_srain_Purple_Kush.fa_linear_c30_fix_sci.png
Source: Cannabis_sativa_strain_Purple_Kush.fa
Full path: /home/tom/Sites/AminoSee/dna/Cannabis_sativa_strain_Purple_Kush.fa
Started: 2:27:48 am Finished: 3:43:17 am Used: 1 hour, 15 minutes, 3.821 seconds  
Machine load averages: 8.07 / 8.35 / 9.14
Bandwidth: 96.68KB / sec DNA Filesize: 431.95MB
Image Output bytes: 17.73MB
Pixels (linear): 4,647,120 Image aspect Ratio: fix
Pixels (hilbert): 1,048,576 (auto) Dimension 7 Hilbert curve
Linear to Hilbert reduction: 4.43 Oversampling: 4
Custom flags: --C_autoK------M7 C30-I5000000 "Science mode" render style
Estimated Codons: 150,977,900 (filesize % 3)
Actual Codons matched: 139,413,624  
Estimate accuracy: 108% of actual 
Non-coding characters: 18,347,828
Coding characters: 447,000,101
Codons per pixel: 30 (linear) 132.96 (hilbert projection)
Max pix setting: 5,000,000
Darken Factor 0.25 / Highlight Factor 4 Black Point: 128
287.8 Gigabytes processed on cheese:
Render serial: 1,273 Render UID: 1568816868725
AminoSee version: 1.28.1
          

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About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.