Cannabis_sativa_strain_Purple_Kush.fa

AminoSee DNA Render Summary

Hilbert curvers of dimension 5 used, yielding images with ~2,127.3 codons per pixel including non-coding regions. Linear reference file shows exactly 17 codons per pixel


1D Linear Map Image

2D Hilbert Map Image

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by Tom Atkinson            aminosee.funk.nz
ah-mee no-see       "I See It Now != I AminoSee it!"


Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

139,413,624 Composite of all amino acids Cannabissativa_srain_Purple_Kush Reference
1. Histidine

329°

255,128,193

4,108,390 Group IV: Basic amino acids Cannabissativa_srain_Purple_Kush Histidine
2. Glutamic acid

16°

255,162,128

4,579,418 Group III: Acidic amino acids Cannabissativa_srain_Purple_Kush Glutamic acid
3. Aspartic acid

31°

255,193,128

3,481,840 Group III: Acidic amino acids Cannabissativa_srain_Purple_Kush Aspartic acid
4. Lysine

313°

255,128,227

9,254,814 Group IV: Basic amino acids Cannabissativa_srain_Purple_Kush Lysine
5. Cysteine

63°

249,255,128

4,202,671 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Cysteine
6. Glycine

78°

217,255,128

5,259,747 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Glycine
7. Alanine

94°

183,255,128

4,025,834 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Alanine
8. Valine

125°

128,255,138

7,037,012 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Valine
9. Leucine

141°

128,255,172

15,275,694 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Leucine
10. Isoleucine

157°

128,255,206

11,075,736 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Isoleucine
11. Phenylalanine

172°

128,255,238

9,212,015 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Phenylalanine
12. Tryptophan

188°

128,238,255

1,965,774 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Tryptophan
13. Serine

203°

128,206,255

11,660,451 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Serine
14. Threonine

219°

128,172,255

7,053,980 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Threonine
15. Glutamine

250°

149,128,255

4,578,339 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Glutamine
16. Asparagine

266°

183,128,255

7,278,543 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Asparagine
17. Tyrosine

282°

217,128,255

5,819,848 Group II: Polar, uncharged amino acids Cannabissativa_srain_Purple_Kush Tyrosine
18. Arginine

297°

249,128,255

6,843,797 Group IV: Basic amino acids Cannabissativa_srain_Purple_Kush Arginine
19. Proline

344°

255,128,162

5,269,131 Group I: Nonpolar amino acids Cannabissativa_srain_Purple_Kush Proline
20. Methionine

110°

149,255,128

2,571,334 START Codon Cannabissativa_srain_Purple_Kush Methionine
21. Ochre

255,128,128

4,069,212 STOP Codon Cannabissativa_srain_Purple_Kush Ochre
22. Amber

47°

255,227,128

2,051,334 STOP Codon Cannabissativa_srain_Purple_Kush Amber
23. Opal

240°

128,128,255

2,738,710 STOP Codon Cannabissativa_srain_Purple_Kush Opal
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

Render Summary

				[object Object]
				

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon



Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.