{"id":2093,"date":"2018-11-12T22:30:01","date_gmt":"2018-11-12T10:30:01","guid":{"rendered":"https:\/\/www.funk.co.nz\/blog\/?p=2093"},"modified":"2018-11-15T20:41:15","modified_gmt":"2018-11-15T08:41:15","slug":"caenorhabditis-elegans","status":"publish","type":"post","link":"https:\/\/www.funk.co.nz\/blog\/science\/caenorhabditis-elegans","title":{"rendered":"Caenorhabditis elegans DNA Visualised using AminoSee"},"content":{"rendered":"<p>The first complex multi-celled organism in the world to have it's entire genome sequenced. I've created a visualisation algorithm to convert DNA into PNG! I'm working on a program called AminoSee that is (eventually) going to be able to project the image below into a 3D model one day at the following URL: <strong><a href=\"\/aminosee\/\">funk.co.nz\/aminosee<\/a><\/strong><\/p>\n<p>The colours are based on which Amino Acid is being coded. Start \/ stop codons delimit the 6 pixel rhythm you can discern. This is done to boost the colour when zoomed out using an effect I call \"the zooming of an interference pattern\". It's like how a laser can be used to see microscopically. The <a title=\"AminoSee Github Repo\" href=\"https:\/\/github.com\/tomachinz\/AminoSee\">source code<\/a> to generate these is available free with the GPLv2 \"copyleft\", which means any modifications you make have to be made available to the community also free.<\/p>\n<p><a href=\"https:\/\/www.funk.co.nz\/blog\/science\/caenorhabditis-elegans\/attachment\/caenorhabditis_elegans-wbcel235-dna_sm-toplevel-fa-2\" rel=\"attachment wp-att-2097\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-2097 size-full\" src=\"https:\/\/www.funk.co.nz\/blog\/wp-content\/uploads\/2018\/11\/Caenorhabditis_elegans.WBcel235.dna_sm.toplevel.fa_-1.png\" alt=\"\" width=\"960\" height=\"8640\" srcset=\"https:\/\/www.funk.co.nz\/blog\/wp-content\/uploads\/2018\/11\/Caenorhabditis_elegans.WBcel235.dna_sm.toplevel.fa_-1.png 960w, https:\/\/www.funk.co.nz\/blog\/wp-content\/uploads\/2018\/11\/Caenorhabditis_elegans.WBcel235.dna_sm.toplevel.fa_-1-600x5400.png 600w, https:\/\/www.funk.co.nz\/blog\/wp-content\/uploads\/2018\/11\/Caenorhabditis_elegans.WBcel235.dna_sm.toplevel.fa_-1-111x1000.png 111w, https:\/\/www.funk.co.nz\/blog\/wp-content\/uploads\/2018\/11\/Caenorhabditis_elegans.WBcel235.dna_sm.toplevel.fa_-1-768x6912.png 768w\" sizes=\"auto, (max-width: 960px) 100vw, 960px\" \/><\/a><\/p>\n<p>The image is half blank its a bug yeah I know.<\/p>\n<p>Based on the DNA file:<\/p>\n<p><strong>Caenorhabditis_elegans.WBcel235.dna_sm.toplevel.fa<\/strong><\/p>\n<p>Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments.<br \/>\nClass: Chromadorea<br \/>\nScientific name: Caenorhabditis elegans<br \/>\nPhylum: Nematoda<br \/>\nRank: Species<br \/>\nHigher classification: Caenorhabditis<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The first complex multi-celled organism in the world to have it&#8217;s entire genome sequenced. I&#8217;ve created a visualisation algorithm to convert DNA into PNG! I&#8217;m working on a program called AminoSee that is (eventually) going to be able to project the image below into a 3D model one day at the following URL: funk.co.nz\/aminosee The [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[36],"tags":[],"class_list":["post-2093","post","type-post","status-publish","format-standard","hentry","category-science"],"_links":{"self":[{"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/posts\/2093","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/comments?post=2093"}],"version-history":[{"count":0,"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/posts\/2093\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/media?parent=2093"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/categories?post=2093"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.funk.co.nz\/blog\/wp-json\/wp\/v2\/tags?post=2093"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}