{"id":2093,"date":"2018-11-12T22:30:01","date_gmt":"2018-11-12T10:30:01","guid":{"rendered":"https:\/\/www.funk.co.nz\/blog\/?p=2093"},"modified":"2018-11-15T20:41:15","modified_gmt":"2018-11-15T08:41:15","slug":"caenorhabditis-elegans","status":"publish","type":"post","link":"https:\/\/www.funk.co.nz\/blog\/science\/caenorhabditis-elegans","title":{"rendered":"Caenorhabditis elegans DNA Visualised using AminoSee"},"content":{"rendered":"

The first complex multi-celled organism in the world to have it's entire genome sequenced. I've created a visualisation algorithm to convert DNA into PNG! I'm working on a program called AminoSee that is (eventually) going to be able to project the image below into a 3D model one day at the following URL: funk.co.nz\/aminosee<\/a><\/strong><\/p>\n

The colours are based on which Amino Acid is being coded. Start \/ stop codons delimit the 6 pixel rhythm you can discern. This is done to boost the colour when zoomed out using an effect I call \"the zooming of an interference pattern\". It's like how a laser can be used to see microscopically. The source code<\/a> to generate these is available free with the GPLv2 \"copyleft\", which means any modifications you make have to be made available to the community also free.<\/p>\n

\"\"<\/a><\/p>\n

The image is half blank its a bug yeah I know.<\/p>\n

Based on the DNA file:<\/p>\n

Caenorhabditis_elegans.WBcel235.dna_sm.toplevel.fa<\/strong><\/p>\n

Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments.
\nClass: Chromadorea
\nScientific name: Caenorhabditis elegans
\nPhylum: Nematoda
\nRank: Species
\nHigher classification: Caenorhabditis<\/p>\n","protected":false},"excerpt":{"rendered":"

The first complex multi-celled organism in the world to have it’s entire genome sequenced. I’ve created a visualisation algorithm to convert DNA into PNG! I’m working on a program called AminoSee that is (eventually) going to be able to project the image below into a 3D model one day at the following URL: funk.co.nz\/aminosee The […]<\/p>\n","protected":false},"author":3,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[36],"tags":[],"class_list":["post-2093","post","type-post","status-publish","format-standard","hentry","category-science"],"yoast_head":"\nCaenorhabditis elegans DNA Visualised using AminoSee - The Funk Blog<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.funk.co.nz\/blog\/science\/caenorhabditis-elegans\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Caenorhabditis elegans DNA Visualised using AminoSee - The Funk Blog\" \/>\n<meta property=\"og:description\" content=\"The first complex multi-celled organism in the world to have it's entire genome sequenced. 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