Sars2-COVID-19WueteGenome-ss-RNA

AminoSee DNA Render Summary for /Users/tom/Dropbox/Sites/funk.co.nz/aminosee_src/dna/Sars2-COVID-19_Wuhan-Hu-1-CompleteGenome-ss-RNA.txt Science render mode

M3C1H2.2

Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

9,101 Composite of all amino acids Sars2-COVID-19WueteGenome-ss-RNA Reference
1. Ochre

255,128,128

206 STOP Codon Sars2-COVID-19WueteGenome-ss-RNA Ochre
2. Glutamic acid

16°

255,162,128

257 Group III: Acidic amino acids Sars2-COVID-19WueteGenome-ss-RNA Glutamic acid
3. Aspartic acid

31°

255,193,128

253 Group III: Acidic amino acids Sars2-COVID-19WueteGenome-ss-RNA Aspartic acid
4. Amber

47°

255,227,128

134 STOP Codon Sars2-COVID-19WueteGenome-ss-RNA Amber
5. Cysteine

63°

249,255,128

428 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Cysteine
6. Glycine

78°

217,255,128

328 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Glycine
7. Alanine

94°

183,255,128

345 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Alanine
8. Methionine

110°

149,255,128

211 START Codon Sars2-COVID-19WueteGenome-ss-RNA Methionine
9. Valine

125°

128,255,138

620 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Valine
10. Leucine

141°

128,255,172

1,165 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Leucine
11. Isoleucine

157°

128,255,206

487 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Isoleucine
12. Phenylalanine

172°

128,255,238

476 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Phenylalanine
13. Tryptophan

188°

128,238,255

176 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Tryptophan
14. Serine

203°

128,206,255

683 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Serine
15. Threonine

219°

128,172,255

606 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Threonine
16. Opal

240°

128,128,255

193 STOP Codon Sars2-COVID-19WueteGenome-ss-RNA Opal
17. Glutamine

250°

149,128,255

339 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Glutamine
18. Asparagine

266°

183,128,255

424 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Asparagine
19. Tyrosine

282°

217,128,255

349 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Tyrosine
20. Arginine

297°

249,128,255

412 Group IV: Basic amino acids Sars2-COVID-19WueteGenome-ss-RNA Arginine
21. Lysine

313°

255,128,227

453 Group IV: Basic amino acids Sars2-COVID-19WueteGenome-ss-RNA Lysine
22. Histidine

329°

255,128,193

294 Group IV: Basic amino acids Sars2-COVID-19WueteGenome-ss-RNA Histidine
23. Proline

344°

255,128,162

262 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Proline
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

1D Linear Map Image

2D Hilbert Map Image

Render Summary

          
Canonical Name: Sars2-COVID-19WueteGenome-ss-RNA
Canonical PNG: Sars2-COVID-19WueteGenome-ss-RNA.txt_linear_c1_sqr_sci.png
Source: Sars2-COVID-19_Wuhan-Hu-1-CompleteGenome-ss-RNA.txt
Full path: /Users/tom/Dropbox/Sites/funk.co.nz/aminosee_src/dna/Sars2-COVID-19_Wuhan-Hu-1-CompleteGenome-ss-RNA.txt
Started: 1:57:53 am Finished: 1:57:56 am Used: 1.759 seconds  
Machine load averages: 23.4 / 22.6 / 15.35
Bandwidth: 31.25KB / sec DNA Filesize: 55.46KB
Image Output bytes: 35.55KB
Pixels (linear): 9,101 Image aspect Ratio: sqr
Pixels (hilbert): 4,096 (auto) Dimension 3 Hilbert curve
Linear to Hilbert reduction: 2.22 Oversampling: 4
Custom flags: FUC_1K------M3 C1BRUTE-6,000,000 "Science mode" render style
Estimated Codons: 18,932 (filesize % 3)
Actual Codons matched: 9,101  
Estimate accuracy: 208% of actual 
Non-coding characters: 23,582
Coding characters: 56,505
Codons per pixel: 1 (linear) 2.22 (hilbert projection)
Max pix setting: 6,000,000
Darken Factor 0.25 / Highlight Factor 4 Black Point: 128
25.7 Gigabytes processed on moderna.fritz.box:
Render serial: 2,020 Render UID: 1586005074207
AminoSee version: 1.28.2
          

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Linear Projection

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About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.