Sars2-COVID-19_Wuhan-Hu-1-CompleteGenome-ss-RNA.txt

AminoSee DNA Render Summary

Hilbert curvers of dimension 3 used, yielding images with ~2.2 codons per pixel including non-coding regions. Linear reference file shows exactly 1 codons per pixel


1D Linear Map Image

2D Hilbert Map Image

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by Tom Atkinson            aminosee.funk.nz
ah-mee no-see       "I See It Now != I AminoSee it!"


Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

9,101 Composite of all amino acids Sars2-COVID-19WueteGenome-ss-RNA Reference
1. Histidine

329°

255,128,193

294 Group IV: Basic amino acids Sars2-COVID-19WueteGenome-ss-RNA Histidine
2. Glutamic acid

16°

255,162,128

257 Group III: Acidic amino acids Sars2-COVID-19WueteGenome-ss-RNA Glutamic acid
3. Aspartic acid

31°

255,193,128

253 Group III: Acidic amino acids Sars2-COVID-19WueteGenome-ss-RNA Aspartic acid
4. Lysine

313°

255,128,227

453 Group IV: Basic amino acids Sars2-COVID-19WueteGenome-ss-RNA Lysine
5. Cysteine

63°

249,255,128

428 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Cysteine
6. Glycine

78°

217,255,128

328 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Glycine
7. Alanine

94°

183,255,128

345 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Alanine
8. Valine

125°

128,255,138

620 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Valine
9. Leucine

141°

128,255,172

1,165 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Leucine
10. Isoleucine

157°

128,255,206

487 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Isoleucine
11. Phenylalanine

172°

128,255,238

476 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Phenylalanine
12. Tryptophan

188°

128,238,255

176 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Tryptophan
13. Serine

203°

128,206,255

683 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Serine
14. Threonine

219°

128,172,255

606 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Threonine
15. Glutamine

250°

149,128,255

339 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Glutamine
16. Asparagine

266°

183,128,255

424 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Asparagine
17. Tyrosine

282°

217,128,255

349 Group II: Polar, uncharged amino acids Sars2-COVID-19WueteGenome-ss-RNA Tyrosine
18. Arginine

297°

249,128,255

412 Group IV: Basic amino acids Sars2-COVID-19WueteGenome-ss-RNA Arginine
19. Proline

344°

255,128,162

262 Group I: Nonpolar amino acids Sars2-COVID-19WueteGenome-ss-RNA Proline
20. Methionine

110°

149,255,128

211 START Codon Sars2-COVID-19WueteGenome-ss-RNA Methionine
21. Ochre

255,128,128

206 STOP Codon Sars2-COVID-19WueteGenome-ss-RNA Ochre
22. Amber

47°

255,227,128

134 STOP Codon Sars2-COVID-19WueteGenome-ss-RNA Amber
23. Opal

240°

128,128,255

193 STOP Codon Sars2-COVID-19WueteGenome-ss-RNA Opal
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

Render Summary

				[object Object]
				

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon



Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.