Influenza-A-virus-H9N2-NC_004905.gbk

AminoSee DNA Render Summary

Hilbert curvers of dimension 1 used, yielding images with ~7.6 codons per pixel including non-coding regions. Linear reference file shows exactly 1 codons per pixel


1D Linear Map Image

2D Hilbert Map Image

MADE IN NEW ZEALAND
╔═╗┌┬┐┬┌┐┌┌─┐╔═╗┌─┐┌─┐  ╔╦╗╔╗╔╔═╗  ╦  ╦┬┌─┐┬ ┬┌─┐┬─┐
╠═╣││││││││ │╚═╗├┤ ├┤    ║║║║║╠═╣  ╚╗╔╝│├┤ │││├┤ ├┬┘
╩ ╩┴ ┴┴┘└┘└─┘╚═╝└─┘└─┘  ═╩╝╝╚╝╩ ╩   ╚╝ ┴└─┘└┴┘└─┘┴└─
by Tom Atkinson            aminosee.funk.nz
ah-mee no-see       "I See It Now != I AminoSee it!"


Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

489 Composite of all amino acids Influenza-A-virus-H9N2-NC_004905 Reference
1. Histidine

329°

255,128,193

16 Group IV: Basic amino acids Influenza-A-virus-H9N2-NC_004905 Histidine
2. Glutamic acid

16°

255,162,128

35 Group III: Acidic amino acids Influenza-A-virus-H9N2-NC_004905 Glutamic acid
3. Aspartic acid

31°

255,193,128

26 Group III: Acidic amino acids Influenza-A-virus-H9N2-NC_004905 Aspartic acid
4. Lysine

313°

255,128,227

29 Group IV: Basic amino acids Influenza-A-virus-H9N2-NC_004905 Lysine
5. Cysteine

63°

249,255,128

11 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Cysteine
6. Glycine

78°

217,255,128

35 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Glycine
7. Alanine

94°

183,255,128

16 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Alanine
8. Valine

125°

128,255,138

17 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Valine
9. Leucine

141°

128,255,172

34 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Leucine
10. Isoleucine

157°

128,255,206

23 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Isoleucine
11. Phenylalanine

172°

128,255,238

17 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Phenylalanine
12. Tryptophan

188°

128,238,255

17 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Tryptophan
13. Serine

203°

128,206,255

36 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Serine
14. Threonine

219°

128,172,255

23 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Threonine
15. Glutamine

250°

149,128,255

33 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Glutamine
16. Asparagine

266°

183,128,255

19 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Asparagine
17. Tyrosine

282°

217,128,255

11 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Tyrosine
18. Arginine

297°

249,128,255

38 Group IV: Basic amino acids Influenza-A-virus-H9N2-NC_004905 Arginine
19. Proline

344°

255,128,162

19 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Proline
20. Methionine

110°

149,255,128

13 START Codon Influenza-A-virus-H9N2-NC_004905 Methionine
21. Ochre

255,128,128

6 STOP Codon Influenza-A-virus-H9N2-NC_004905 Ochre
22. Amber

47°

255,227,128

6 STOP Codon Influenza-A-virus-H9N2-NC_004905 Amber
23. Opal

240°

128,128,255

9 STOP Codon Influenza-A-virus-H9N2-NC_004905 Opal
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

Render Summary

				[object Object]
				

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon



Hilbert Projection

This is a curve that touches each pixel exactly once, without crossing over or breaking.

Linear Projection

The following image is in raster order, top left to bottom right:

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.