Influenza-A-virus-H9N2-NC_004905

AminoSee DNA Render Summary for /home/tom/Sites/AminoSee/dna/Influenza-A-virus-H9N2-NC_004905.gbk Science render mode

M1C1HNaN

Amino Acid Hue° RGB Count Description Hilbert PNG
0. Reference

255,128,128

489 Composite of all amino acids Influenza-A-virus-H9N2-NC_004905 Reference
1. Ochre

255,128,128

6 STOP Codon Influenza-A-virus-H9N2-NC_004905 Ochre
2. Glutamic acid

16°

255,162,128

35 Group III: Acidic amino acids Influenza-A-virus-H9N2-NC_004905 Glutamic acid
3. Aspartic acid

31°

255,193,128

26 Group III: Acidic amino acids Influenza-A-virus-H9N2-NC_004905 Aspartic acid
4. Amber

47°

255,227,128

6 STOP Codon Influenza-A-virus-H9N2-NC_004905 Amber
5. Cysteine

63°

249,255,128

11 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Cysteine
6. Glycine

78°

217,255,128

35 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Glycine
7. Alanine

94°

183,255,128

16 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Alanine
8. Methionine

110°

149,255,128

13 START Codon Influenza-A-virus-H9N2-NC_004905 Methionine
9. Valine

125°

128,255,138

17 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Valine
10. Leucine

141°

128,255,172

34 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Leucine
11. Isoleucine

157°

128,255,206

23 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Isoleucine
12. Phenylalanine

172°

128,255,238

17 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Phenylalanine
13. Tryptophan

188°

128,238,255

17 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Tryptophan
14. Serine

203°

128,206,255

36 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Serine
15. Threonine

219°

128,172,255

23 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Threonine
16. Opal

240°

128,128,255

9 STOP Codon Influenza-A-virus-H9N2-NC_004905 Opal
17. Glutamine

250°

149,128,255

33 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Glutamine
18. Asparagine

266°

183,128,255

19 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Asparagine
19. Tyrosine

282°

217,128,255

11 Group II: Polar, uncharged amino acids Influenza-A-virus-H9N2-NC_004905 Tyrosine
20. Arginine

297°

249,128,255

38 Group IV: Basic amino acids Influenza-A-virus-H9N2-NC_004905 Arginine
21. Lysine

313°

255,128,227

29 Group IV: Basic amino acids Influenza-A-virus-H9N2-NC_004905 Lysine
22. Histidine

329°

255,128,193

16 Group IV: Basic amino acids Influenza-A-virus-H9N2-NC_004905 Histidine
23. Proline

344°

255,128,162

19 Group I: Nonpolar amino acids Influenza-A-virus-H9N2-NC_004905 Proline
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

1D Linear Map Image

2D Hilbert Map Image

Render Summary

          
Canonical Name: Influenza-A-virus-H9N2-NC_004905
Canonical PNG: Influenza-A-virus-H9N2-NC_004905.gbk_linear_c1_fix_sci.png
Source: Influenza-A-virus-H9N2-NC_004905.gbk
Full path: /home/tom/Sites/AminoSee/dna/Influenza-A-virus-H9N2-NC_004905.gbk
Started: 1:37:56 am Finished: 1:37:57 am Used: 0.178 seconds  
Machine load averages: 12.16 / 8.24 / 6.99
Bandwidth: 33.2KB / sec DNA Filesize: 5.87KB
Image Output bytes: 1.91KB
Pixels (linear): 489 Image aspect Ratio: fix
Pixels (hilbert): 256 (auto) Dimension 1 Hilbert curve
Linear to Hilbert reduction: NaN Oversampling: 4
Custom flags: -UC_autoK------M1 C1-I1000000 "Science mode" render style
Estimated Codons: 2,004 (filesize % 3)
Actual Codons matched: 489  
Estimate accuracy: 410% of actual 
Non-coding characters: 3,928
Coding characters: 6,059
Codons per pixel: 1 (linear) NaN (hilbert projection)
Max pix setting: 1,000,000
Darken Factor 0.25 / Highlight Factor 4 Black Point: 128
286.3 Gigabytes processed on cheese:
Render serial: 1,267 Render UID: 1568813876842
AminoSee version: 1.28.1
          

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About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding this.regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.