AminoSee DNA Render Summary for Brown_Kiwi_013982187v1

AmberTryptophanMethionineOpalOchreAspartic acidTyrosineHistidineGlutamic acidAsparagineCysteineGlutamineProlineGlycineAlanineArginineThreonineValineIsoleucinePhenylalanineLysineSerineLeucine

  Filename: Brown_Kiwi_013982187v1
  Highlights: Leucine
  Your custom flags: F      
  Science Mode
  Aspect Ratio: sqr
  Input bytes: 1,554,873,886
  Output bytes: 13,533,044
  Estimated Codons by file size: 518,291,295
  Actual Codons matched: 419,524,425
  Estimate accuracy: 24%
  Error Clock: 217,626,006
  CharClock: 1,532,925,470
  Codons per pixel: 123.57 integer
  Pixels: 3,383,261 (colClock)
  Linear scale down:  3.23
  overSampleFactor: 1
  Shrink Factor: 3.23
  Amino acid blend opacity: 0.81%
  Users Max magnitude: Not Set Max pix:1,048,576
  Hilbert Magnitude: false / 8
  Hilbert Curve Pixels: 1048576
  Darken Factor 1
  Highlight Factor 18.06
  Time used: 1,309,264 miliseconds

1D Linear Map Image

2D Hilbert Map Image

3D Hilbert Map Image

AminoSeeNoEvil

DNA/RNA Chromosome Viewer

A new way to view DNA that attributes a colour hue to each Amino acid codon triplet



Amino Acid Hue RGB Count Description Hilbert PNG
Non-coding NNN

120°

128,255,128

0 Expressed as NNN Codon Non-codingNNN
Stop Codons

120°

128,255,128

0 One of Opal, Ochre, or Amber StopCodons
Start Codons

120°

128,255,128

0 Count of Methionine StartCodons
Amber

47°

255,227,128

5,215,637 STOP Codon Amber
Tryptophan

188°

128,238,255

6,653,154 Group I: Nonpolar amino acids Tryptophan
Methionine

110°

149,255,128

7,538,596 START Codon Methionine
Opal

240°

128,128,255

8,073,922 STOP Codon Opal
Ochre

255,128,128

8,536,988 STOP Codon Ochre
Aspartic acid

31°

255,193,128

9,490,258 Group III: Acidic amino acids Asparticacid
Tyrosine

282°

217,128,255

12,588,615 Group II: Polar, uncharged amino acids Tyrosine
Histidine

329°

255,128,193

13,513,605 Group IV: Basic amino acids Histidine
Glutamic acid

16°

255,162,128

15,156,384 Group III: Acidic amino acids Glutamicacid
Asparagine

266°

183,128,255

16,143,922 Group II: Polar, uncharged amino acids Asparagine
Cysteine

63°

249,255,128

16,443,155 Group II: Polar, uncharged amino acids Cysteine
Glutamine

250°

149,128,255

17,678,881 Group II: Polar, uncharged amino acids Glutamine
Proline

344°

255,128,162

19,930,029 Group I: Nonpolar amino acids Proline
Glycine

78°

217,255,128

19,932,793 Group I: Nonpolar amino acids Glycine
Alanine

94°

183,255,128

20,581,787 Group I: Nonpolar amino acids Alanine
Arginine

297°

249,128,255

21,251,126 Group IV: Basic amino acids Arginine
Threonine

219°

128,172,255

21,418,611 Group II: Polar, uncharged amino acids Threonine
Valine

125°

128,255,138

21,423,289 Group I: Nonpolar amino acids Valine
Isoleucine

157°

128,255,206

22,761,560 Group I: Nonpolar amino acids Isoleucine
Phenylalanine

172°

128,255,238

24,480,694 Group I: Nonpolar amino acids Phenylalanine
Lysine

313°

255,128,227

24,911,380 Group IV: Basic amino acids Lysine
Serine

203°

128,206,255

38,866,347 Group II: Polar, uncharged amino acids Serine
Leucine

141°

128,255,172

46,933,692 Group I: Nonpolar amino acids Leucine
19 Amino Acids, 4 Start/Stop codes, 1 NNN . . . .

About Start and Stop Codons

The codon AUG is called the START codon as it the first codon in the transcribed mRNA that undergoes translation. AUG is the most common START codon and it codes for the amino acid methionine (Met) in eukaryotes and formyl methionine (fMet) in prokaryotes. During protein synthesis, the tRNA recognizes the START codon AUG with the help of some initiation factors and starts translation of mRNA. Some alternative START codons are found in both eukaryotes and prokaryotes. Alternate codons usually code for amino acids other than methionine, but when they act as START codons they code for Met due to the use of a separate initiator tRNA. Non-AUG START codons are rarely found in eukaryotic genomes. Apart from the usual Met codon, mammalian cells can also START translation with the amino acid leucine with the help of a leucyl-tRNA decoding the CUG codon. Mitochondrial genomes use AUA and AUU in humans and GUG and UUG in prokaryotes as alternate START codons. In prokaryotes, E. coli is found to use AUG 83%, GUG 14%, and UUG 3% as START codons. The lacA and lacI coding regions in the E coli lac operon don’t have AUG START codon and instead use UUG and GUG as initiation codons respectively.

Linear Projection

The following image is in raster order, top left to bottom right: